All new & relevant material can be found on the GitHub page:
https://github.com/mattjbayly
R resources for ecological niche modelling:
Main R packages:
Environmental variables:
https://github.com/mattjbayly
R resources for ecological niche modelling:
Main R packages:
- biomod2 - create ENMS & SDMs for species with GLM, GAM, BRT, RF, MAXENT ect.
- dismo - general package for basic species distribution modelling.
- Evaluating models & data
- ecospat - NEW! ~ huge bag up spatial ecology methods in R
- SDMtools - thresholds & evaluation metrics also so see PresenceAbsence
- Presenting maps & amodels
Working with & preparing spatial data layers
Public open access record locality data sources, many tend to reference each other, but occasionally the larger databases tend to loose some of the associated metadata.
- GBIF - major go to source
- iNaturalist
Specific to Mimulus cardinalis or other plants in Oregon and California
- CCH - California Consortium of herbaria
- Oregon Flora Project
- Consortium of Pacific Northwest Herbaria - private data (need to ask permission).
Grey literature search engines for locality records
- (if rare) Species search directly in Goole Maps or Google Earth
- Morpho - links report to geographic location and allows species specific searches.
- Dryad - only if desperate for more locality records of a rare species.
- Georeferenced photo sharing sites such as Calphoto or Panoramio.
Environmental variables:
- Climatic data - list of sources
- Elevation & Hydrological data - USA only see: hydrosheds for Global low res
- Landcover data
- many more
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